Package index

Datasets

covid_challenge: COVID-19 viral load following challenge
covid_variants: COG-UK counts of genomic variants
covid_variants_ltla: COG-UK counts of genomic variants by lower tier local authority
du_serial_interval: Serial interval from publicly reported cases
early_global_combined: John Hopkins data from the early outbreak
england_cases_by_5yr_age: England only COVID-19 case counts stratified by 5-year age bands
england_covid_positivity: England only COVID-19 case counts with total test numbers
ganyani_clusters: COVID-19 cluster outbreaks data from Tianjin and Singapore
geography: UK geographic codes an CTRY, RGN and LAD level
ltla_cases: UK-wide COVID-19 case counts stratified by Lower tier local authority
nhs_app: NHS digital contact tracing activity
ons_infection_survey: ONS COVID-19 infection survey
pcr_test_sensitivity: COVID PCR test sensitivity over time
spim_consensus: SPI-M-O consensus reproduction number and growth rate estimates
timeline: Timeline of events
uk_population_2019: Country, regional, and sub-national total population estimates
uk_population_2019_by_10yr_age: Country, regional, and sub-national population estimates by 10 year age groups
uk_population_2019_by_5yr_age: Country, regional, and sub-national population estimates by 5 year age groups
viral_shedding: COVID-19 Viral shedding data