Plot an infectivity profile

Plot an infectivity profile

Usage

plot_ip(ip = i_empirical_ip, alpha = 0.1, ...)

Arguments

ip

A long format infectivity profile

A dataframe containing the following columns:

• boot (anything + default(1)) - a bootstrap identifier

• probability (proportion) - the probability of new event during this period.

• a0 (double) - the beginning of the time period (in days)

• a1 (double) - the end of the time period (in days)

Must be grouped by: boot (exactly).

A default value is defined.

alpha

the alpha value of the bootstrap lines

...

passed onto geom_segment for controlling line thickness, alpha etc.

Value

an ggplot object

Examples

if(interactive()) {
  plot_ip(ganyani_ip,alpha=0.1)
}