Package io.github.ai4ci.abm.inhost

Interface InHostStochasticState

All Superinterfaces:
InHostModelState<StochasticModel>, Serializable
All Known Implementing Classes:
ImmutableInHostStochasticState
@Immutable public interface InHostStochasticState extends InHostModelState<StochasticModel>

  • Method Details

    • getTargets

      int getTargets()

    • getImmuneTargetRatio

      double getImmuneTargetRatio()

    • getImmuneActivationRate

      double getImmuneActivationRate()

    • getImmuneWaningRate

      double getImmuneWaningRate()

    • getInfectionCarrierProbability

      double getInfectionCarrierProbability()

    • getTargetRecoveryRate

      double getTargetRecoveryRate()

    • getTime

      int getTime()
      Specified by:
      getTime in interface InHostModelState<StochasticModel>

    • getVirions

      int getVirions()

    • getVirionsProduced

      int getVirionsProduced()

    • getTargetSusceptible

      int getTargetSusceptible()

    • getTargetExposed

      int getTargetExposed()

    • getTargetInfected

      int getTargetInfected()

    • getImmune

      @Default default Integer getImmune()

    • getImmunePriming

      int getImmunePriming()

    • getImmuneActive

      int getImmuneActive()

    • getBaselineViralReplicationRate

      @Redacted double getBaselineViralReplicationRate()

    • getBaselineViralInfectionRate

      @Redacted double getBaselineViralInfectionRate()

    • getVirionsDiseaseCutoff

      @Redacted int getVirionsDiseaseCutoff()

    • getTargetRemoved

      @Derived default int getTargetRemoved()

    • getNormalisedViralLoad

      @Derived default double getNormalisedViralLoad()
      Specified by:
      getNormalisedViralLoad in interface InHostModelState<StochasticModel>

    • isInfected

      default boolean isInfected()
      Infected but may be incubating
      Specified by:
      isInfected in interface InHostModelState<StochasticModel>

    • getNormalisedSeverity

      @Derived default double getNormalisedSeverity()
      Specified by:
      getNormalisedSeverity in interface InHostModelState<StochasticModel>

    • getImmuneActivity

      @Derived default double getImmuneActivity()
      Specified by:
      getImmuneActivity in interface InHostModelState<StochasticModel>

    • getImmuneDormant

      @Derived default int getImmuneDormant()

    • update

      default InHostStochasticState update(Sampler rng, double virionDose, double immunisationDose)
      Update the viral load for a person. This depends on the PersonHistory being up to date which it should be based on the fact this is updated during the next update phase.
      Specified by:
      update in interface InHostModelState<StochasticModel>
      Parameters:
      rng - (thread local RNG)
      Returns: