Package io.github.ai4ci.config.inhost

Interface StochasticModel

All Superinterfaces:

InHostConfiguration, Serializable

All Known Subinterfaces:

StochasticModel._PartialStochasticModel

All Known Implementing Classes:

ImmutableStochasticModel, PartialStochasticModel

@Immutable
public interface StochasticModel
extends InHostConfiguration

Nested Class Summary

Nested Classes

Modifier and Type	Interface	Description
static interface	StochasticModel._PartialStochasticModel

Field Summary

Fields

Modifier and Type	Field	Description
static final ImmutableStochasticModel	DEFAULT

Fields inherited from interface io.github.ai4ci.config.inhost.InHostConfiguration

LIMIT, log

Method Summary

Modifier and Type	Method	Description
Double	getBaselineViralInfectionRate()
Double	getBaselineViralReplicationRate()
Abstraction.Distribution	getImmuneActivationRate()
Abstraction.Distribution	getImmuneTargetRatio()
Abstraction.Distribution	getImmuneWaningRate()
Abstraction.Distribution	getInfectionCarrierProbability()
Integer	getTargetCellCount()
Abstraction.Distribution	getTargetRecoveryRate()
Integer	getVirionsDiseaseCutoff()	Given the parameters for the virus, what is the unit of virions.

Methods inherited from interface io.github.ai4ci.config.inhost.InHostConfiguration

getSeverityFatalityCutoff, getSeverityHospitalisationCutoff, getSeveritySymptomsCutoff

Field Details

DEFAULT

static final ImmutableStochasticModel DEFAULT

Method Details

getTargetCellCount

Integer getTargetCellCount()

getImmuneTargetRatio

Abstraction.Distribution getImmuneTargetRatio()

getImmuneActivationRate

Abstraction.Distribution getImmuneActivationRate()

getImmuneWaningRate

Abstraction.Distribution getImmuneWaningRate()

getInfectionCarrierProbability

Abstraction.Distribution getInfectionCarrierProbability()

getTargetRecoveryRate

Abstraction.Distribution getTargetRecoveryRate()

getBaselineViralInfectionRate

Double getBaselineViralInfectionRate()

getBaselineViralReplicationRate

Double getBaselineViralReplicationRate()

getVirionsDiseaseCutoff

Integer getVirionsDiseaseCutoff()

Given the parameters for the virus, what is the unit of virions. This is a calibration parameter, and defines the limit of what is considered disease. It should be the lowest value that is transmissible and defines a patient as "infected" it does not follow that an uninfected patient does not have a small in-host viral load.

Returns:

the cutoff