Serialized Form (jpansim2 0.2.0 API)

Package io.github.ai4ci.abm
- Class io.github.ai4ci.abm.ImmutableContact
  
  class ImmutableContact extends Object implements Serializable
  - Serialized Fields
    
    detected
    
    boolean detected
    
    participant1Id
    
    int participant1Id
    
    participant2Id
    
    int participant2Id
- Class io.github.ai4ci.abm.ImmutableOutbreakBaseline
  
  class ImmutableOutbreakBaseline extends Object implements Serializable
  - Serialized Fields
    
    defaultPolicyState
    
    StateMachine.PolicyState defaultPolicyState
    
    expectedContactsPerPersonPerDay
    
    double expectedContactsPerPersonPerDay
    
    infectiveDuration
    
    int infectiveDuration
    
    severityDeathCutoff
    
    double severityDeathCutoff
    
    severityHospitalisationCutoff
    
    double severityHospitalisationCutoff
    
    severitySymptomsCutoff
    
    double severitySymptomsCutoff
    
    symptomDuration
    
    int symptomDuration
    
    viralLoadTransmissibilityProbabilityFactor
    
    double viralLoadTransmissibilityProbabilityFactor
- Class io.github.ai4ci.abm.ImmutableOutbreakHistory
  
  class ImmutableOutbreakHistory extends Object implements Serializable
  - Serialized Fields
    
    cumulativeAdmissions
    
    long cumulativeAdmissions
    
    cumulativeComplianceDecrease
    
    double cumulativeComplianceDecrease
    
    cumulativeInfections
    
    long cumulativeInfections
    
    cumulativeMobilityDecrease
    
    double cumulativeMobilityDecrease
    
    entity
    
    Outbreak entity
    
    incidence
    
    long incidence
    
    infectedCount
    
    long infectedCount
    
    maximumHospitalBurden
    
    long maximumHospitalBurden
    
    maximumIncidence
    
    long maximumIncidence
    
    maximumPrevalence
    
    double maximumPrevalence
    
    testNegativesByResultDate
    
    long testNegativesByResultDate
    
    testPositivesByResultDate
    
    long testPositivesByResultDate
    
    time
    
    Integer time
    
    timeToMaximumIncidence
    
    long timeToMaximumIncidence
    
    urn
    
    String urn
- Class io.github.ai4ci.abm.ImmutableOutbreakState
  
  class ImmutableOutbreakState extends Object implements Serializable
  - Serialized Fields
    
    contactDetectedProbability
    
    double contactDetectedProbability
    
    entity
    
    Outbreak entity
    
    presumedIncubationPeriod
    
    int presumedIncubationPeriod
    
    presumedInfectiousPeriod
    
    int presumedInfectiousPeriod
    
    presumedSymptomSensitivity
    
    double presumedSymptomSensitivity
    
    presumedSymptomSpecificity
    
    double presumedSymptomSpecificity
    
    time
    
    Integer time
    
    transmissibilityModifier
    
    double transmissibilityModifier
    
    urn
    
    String urn
- Class io.github.ai4ci.abm.ImmutablePersonBaseline
  
  class ImmutablePersonBaseline extends Object implements Serializable
  - Serialized Fields
    
    appUseProbability
    
    Double appUseProbability
    
    complianceBaseline
    
    Double complianceBaseline
    
    defaultBehaviourState
    
    StateMachine.BehaviourState defaultBehaviourState
    
    mobilityBaseline
    
    Double mobilityBaseline
    
    selfIsolationDepth
    
    Double selfIsolationDepth
    
    symptomSensitivity
    
    Double symptomSensitivity
    
    symptomSpecificity
    
    Double symptomSpecificity
    
    transmissibilityModifier
    
    Double transmissibilityModifier
- Class io.github.ai4ci.abm.ImmutablePersonDemographic
  
  class ImmutablePersonDemographic extends Object implements Serializable
  - Serialized Fields
    
    age
    
    double age
- Class io.github.ai4ci.abm.ImmutablePersonHistory
  
  class ImmutablePersonHistory extends Object implements Serializable
  - Serialized Fields
    
    contactExposure
    
    double contactExposure
    
    dead
    
    boolean dead
    
    entity
    
    Person entity
    
    infectious
    
    boolean infectious
    
    maxDelay
    
    int maxDelay
    
    normalisedSeverity
    
    double normalisedSeverity
    
    normalisedViralLoad
    
    double normalisedViralLoad
    
    presumedLocalPrevalence
    
    double presumedLocalPrevalence
    
    reportedSymptomatic
    
    boolean reportedSymptomatic
    
    requiringHospitalisation
    
    boolean requiringHospitalisation
    
    symptomatic
    
    boolean symptomatic
    
    time
    
    Integer time
    
    todaysContacts
    
    Contact[] todaysContacts
    
    todaysExposures
    
    Exposure[] todaysExposures
    
    todaysTests
    
    com.google.common.collect.ImmutableList<TestResult> todaysTests
    
    urn
    
    String urn
- Class io.github.ai4ci.abm.ImmutablePersonState
  
  class ImmutablePersonState extends Object implements Serializable
  - Serialized Fields
    
    appUseModifier
    
    double appUseModifier
    
    complianceModifier
    
    double complianceModifier
    
    compliant
    
    boolean compliant
    
    dead
    
    boolean dead
    
    entity
    
    Person entity
    
    immunisationDose
    
    double immunisationDose
    
    importationExposure
    
    double importationExposure
    
    infectious
    
    boolean infectious
    
    inHostModel
    
    InHostModelState<?> inHostModel
    
    mobilityModifier
    
    double mobilityModifier
    
    reportedSymptomatic
    
    boolean reportedSymptomatic
    
    requiringHospitalisation
    
    boolean requiringHospitalisation
    
    riskModel
    
    ImmutableRiskModel riskModel
    
    susceptibilityModifier
    
    double susceptibilityModifier
    
    symptomatic
    
    boolean symptomatic
    
    time
    
    Integer time
    
    transmissibilityModifier
    
    double transmissibilityModifier
    
    urn
    
    String urn
    
    usingAppToday
    
    boolean usingAppToday
- Class io.github.ai4ci.abm.ImmutableTestResult
  
  class ImmutableTestResult extends Object implements Serializable
  - Serialized Fields
    
    delay
    
    long delay
    
    finalObservedResult
    
    boolean finalObservedResult
    
    testParams
    
    ImmutableTestParameters testParams
    
    time
    
    long time
    
    trueLogLikelihoodRatio
    
    double trueLogLikelihoodRatio
    
    viralLoadSample
    
    double viralLoadSample
    
    viralLoadTruth
    
    double viralLoadTruth
- Class io.github.ai4ci.abm.ModifiableOutbreak
  
  class ModifiableOutbreak extends Object implements Serializable
  - Serialized Fields
    
    baseline
    
    OutbreakBaseline baseline
    
    currentState
    
    OutbreakState currentState
    
    executionConfiguration
    
    ExecutionConfiguration executionConfiguration
    
    history
    
    ArrayList<OutbreakHistory> history
    
    initBits
    
    long initBits
    
    nextHistory
    
    Ephemeral<ImmutableOutbreakHistory.Builder> nextHistory
    
    nextState
    
    Ephemeral<ImmutableOutbreakState.Builder> nextState
    
    people
    
    ThreadSafeArray<Person> people
    
    setupConfiguration
    
    SetupConfiguration setupConfiguration
    
    socialNetwork
    
    org.jgrapht.graph.SimpleWeightedGraph<Person,SocialRelationship> socialNetwork
    
    stateMachine
    
    StateMachine stateMachine
    
    urn
    
    String urn
- Class io.github.ai4ci.abm.ModifiablePerson
  
  class ModifiablePerson extends Person implements Serializable
  - Serialized Fields
    
    baseline
    
    PersonBaseline baseline
    
    currentState
    
    PersonState currentState
    
    demographic
    
    PersonDemographic demographic
    
    history
    
    ArrayList<PersonHistory> history
    
    id
    
    Integer id
    
    initBits
    
    long initBits
    
    nextHistory
    
    Ephemeral<ImmutablePersonHistory.Builder> nextHistory
    
    nextState
    
    Ephemeral<ImmutablePersonState.Builder> nextState
    
    outbreak
    
    ModifiableOutbreak outbreak
    
    stateMachine
    
    StateMachine stateMachine
- Class io.github.ai4ci.abm.Person
  
  class Person extends Object implements Serializable
- Class io.github.ai4ci.abm.SocialRelationship
  
  class SocialRelationship extends org.jgrapht.graph.DefaultWeightedEdge implements Serializable
Package io.github.ai4ci.abm.behaviour
Package io.github.ai4ci.abm.inhost
- Class io.github.ai4ci.abm.inhost.ImmutableBiPhasicLogistic
  
  class ImmutableBiPhasicLogistic extends Object implements Serializable
  - Serialized Fields
    
    decayRate
    
    double decayRate
    
    decayTime
    
    double decayTime
    
    growthRate
    
    double growthRate
    
    growthTime
    
    double growthTime
    
    unit
    
    double unit
- Class io.github.ai4ci.abm.inhost.ImmutableExposureModel
  
  class ImmutableExposureModel extends Object implements Serializable
  - Serialized Fields
    
    decayOffset
    
    double decayOffset
    
    exposureTime
    
    int exposureTime
    
    growthOffset
    
    double growthOffset
    
    immuneActivityAtExposure
    
    double immuneActivityAtExposure
    
    normalisedExposure
    
    double normalisedExposure
- Class io.github.ai4ci.abm.inhost.ImmutableInHostMarkovState
  
  class ImmutableInHostMarkovState extends Object implements Serializable
  - Serialized Fields
    
    diseaseState
    
    InHostMarkovState.DiseaseState diseaseState
    
    infectionCaseRate
    
    double infectionCaseRate
    
    infectionFatalityRate
    
    double infectionFatalityRate
    
    infectionHospitalisationRate
    
    double infectionHospitalisationRate
    
    machine
    
    ImmutableInHostMarkovStateMachine machine
    
    normalisedSeverity
    
    double normalisedSeverity
    
    symptomState
    
    InHostMarkovState.SymptomState symptomState
    
    time
    
    int time
- Class io.github.ai4ci.abm.inhost.ImmutableInHostMarkovStateMachine
  
  class ImmutableInHostMarkovStateMachine extends Object implements Serializable
  - Serialized Fields
    
    pAsymptomaticSymptomatic
    
    double pAsymptomaticSymptomatic
    
    pExposedInfectious
    
    double pExposedInfectious
    
    pHospitalisedAsymptomatic
    
    double pHospitalisedAsymptomatic
    
    pHospitalisedDead
    
    double pHospitalisedDead
    
    pImmuneSusceptible
    
    double pImmuneSusceptible
    
    pInfectiousImmune
    
    double pInfectiousImmune
    
    pSymptomaticAsymptomatic
    
    double pSymptomaticAsymptomatic
    
    pSymptomaticDead
    
    double pSymptomaticDead
    
    pSymptomaticHospitalised
    
    double pSymptomaticHospitalised
- Class io.github.ai4ci.abm.inhost.ImmutableInHostPhenomenologicalState
  
  class ImmutableInHostPhenomenologicalState extends Object implements Serializable
  - Serialized Fields
    
    exposures
    
    com.google.common.collect.ImmutableList<ExposureModel> exposures
    
    immuneActivity
    
    double immuneActivity
    
    immunityModel
    
    ImmutableBiPhasicLogistic immunityModel
    
    infectiousnessCutoff
    
    double infectiousnessCutoff
    
    time
    
    int time
    
    viralLoad
    
    double viralLoad
    
    viralLoadModel
    
    ImmutableBiPhasicLogistic viralLoadModel
- Class io.github.ai4ci.abm.inhost.ImmutableInHostStochasticState
  
  class ImmutableInHostStochasticState extends Object implements Serializable
  - Serialized Fields
    
    baselineViralInfectionRate
    
    double baselineViralInfectionRate
    
    baselineViralReplicationRate
    
    double baselineViralReplicationRate
    
    immune
    
    Integer immune
    
    immuneActivationRate
    
    double immuneActivationRate
    
    immuneActive
    
    int immuneActive
    
    immuneActivity
    
    double immuneActivity
    
    immuneDormant
    
    int immuneDormant
    
    immunePriming
    
    int immunePriming
    
    immuneTargetRatio
    
    double immuneTargetRatio
    
    immuneWaningRate
    
    double immuneWaningRate
    
    infectionCarrierProbability
    
    double infectionCarrierProbability
    
    normalisedSeverity
    
    double normalisedSeverity
    
    normalisedViralLoad
    
    double normalisedViralLoad
    
    targetExposed
    
    int targetExposed
    
    targetInfected
    
    int targetInfected
    
    targetRecoveryRate
    
    double targetRecoveryRate
    
    targetRemoved
    
    int targetRemoved
    
    targets
    
    int targets
    
    targetSusceptible
    
    int targetSusceptible
    
    time
    
    int time
    
    virions
    
    int virions
    
    virionsDiseaseCutoff
    
    int virionsDiseaseCutoff
    
    virionsProduced
    
    int virionsProduced
Package io.github.ai4ci.abm.mechanics
- Class io.github.ai4ci.abm.mechanics.ModifiableStateMachineContext
  
  class ModifiableStateMachineContext extends Object implements Serializable
  - Serialized Fields
    
    baselineState
    
    State<?,?,?,?> baselineState
    
    flags
    
    ArrayList<Boolean> flags
    
    initBits
    
    long initBits
    
    lastState
    
    ArrayList<State<?,?,?,?>> lastState
- Class io.github.ai4ci.abm.mechanics.PersonStateContacts
  
  class PersonStateContacts extends Object implements Serializable
  - Serialized Fields
    
    exposure
    
    ThreadSafeArray<Exposure>[] exposure
    
    exposureWait
    
    boolean[] exposureWait
    
    maxSize
    
    int maxSize
    
    network
    
    ThreadSafeArray<Contact>[] network
    
    networkWait
    
    boolean[] networkWait
- Class io.github.ai4ci.abm.mechanics.StateMachine
  
  class StateMachine extends Object implements Serializable
  - Serialized Fields
    
    context
    
    ModifiableStateMachineContext context
    
    currentState
    
    State<?,?,?,?> currentState
Package io.github.ai4ci.abm.policy
Package io.github.ai4ci.abm.riskmodel
- Class io.github.ai4ci.abm.riskmodel.ImmutableKernel
  
  class ImmutableKernel extends Object implements Serializable
  - Serialized Fields
    
    density
    
    double[] density
    
    offset
    
    int offset
- Class io.github.ai4ci.abm.riskmodel.ImmutableRiskModel
  
  class ImmutableRiskModel extends Object implements Serializable
  - Serialized Fields
    
    contactsKernel
    
    ImmutableKernel contactsKernel
    
    directLogOdds
    
    double[] directLogOdds
    
    entity
    
    Person entity
    
    indirectLogOdds
    
    double indirectLogOdds
    
    maxLength
    
    int maxLength
    
    symptomKernel
    
    ImmutableKernel symptomKernel
    
    testKernel
    
    ImmutableKernel testKernel
    
    time
    
    int time

Package io.github.ai4ci.config

Class io.github.ai4ci.config.ImmutableExecutionConfiguration

class ImmutableExecutionConfiguration extends Object implements Serializable

Serialized Fields

appUseProbability

Abstraction.Distribution appUseProbability

asymptomaticFraction
```
Double asymptomaticFraction
```

availableTests

ShallowList<TestParameters> availableTests

caseFatalityRate
```
Double caseFatalityRate
```
caseHospitalisationRate
```
Double caseHospitalisationRate
```
complianceDeteriorationRate
```
Double complianceDeteriorationRate
```
complianceImprovementRate
```
Double complianceImprovementRate
```

complianceProbability

Abstraction.Distribution complianceProbability

contactDetectedProbability
```
Double contactDetectedProbability
```
defaultBehaviourModelName
```
String defaultBehaviourModelName
```
defaultPolicyModelName
```
String defaultPolicyModelName
```

demographicAdjustment

PartialDemographicAdjustment demographicAdjustment

importationProbability
```
Double importationProbability
```
inHostConfiguration
```
InHostConfiguration inHostConfiguration
```
initialEstimateIncubationPeriod
```
Double initialEstimateIncubationPeriod
```
initialEstimateInfectionDuration
```
Double initialEstimateInfectionDuration
```

initialEstimateSymptomSensitivity

Double initialEstimateSymptomSensitivity

initialEstimateSymptomSpecificity

Double initialEstimateSymptomSpecificity

lockdownReleasePrevalenceTrigger
```
Double lockdownReleasePrevalenceTrigger
```
lockdownStartPrevalenceTrigger
```
Double lockdownStartPrevalenceTrigger
```

maximumSocialContactReduction

Abstraction.Distribution maximumSocialContactReduction

name
```
String name
```
organicRateOfMobilityChange
```
Double organicRateOfMobilityChange
```
replicate
```
Integer replicate
```

riskModelContactsKernel

RiskKernelConfiguration riskModelContactsKernel

riskModelSymptomKernel

RiskKernelConfiguration riskModelSymptomKernel

riskModelTestKernel

RiskKernelConfiguration riskModelTestKernel

rO
```
Double rO
```
smartAppRiskTrigger
```
Double smartAppRiskTrigger
```

symptomSensitivity

Abstraction.Distribution symptomSensitivity

symptomSpecificity

Abstraction.Distribution symptomSpecificity

Class io.github.ai4ci.config.ImmutableTestParameters

class ImmutableTestParameters extends Object implements Serializable
- Serialized Fields
  - limitOfDetection
    
    Double limitOfDetection
  - meanTestDelay
    
    Double meanTestDelay
  - sdTestDelay
    
    Double sdTestDelay
  - sensitivity
    
    Double sensitivity
  - specificity
    
    Double specificity
  - testName
    
    String testName

Class io.github.ai4ci.config.PartialDemographicAdjustment

class PartialDemographicAdjustment extends Object implements Serializable

Serialized Fields

appUseProbability

Abstraction.SimpleFunction appUseProbability

asymptomaticFraction

Abstraction.SimpleFunction asymptomaticFraction

caseFatalityRate

Abstraction.SimpleFunction caseFatalityRate

caseHospitalisationRate

Abstraction.SimpleFunction caseHospitalisationRate

complianceProbability

Abstraction.SimpleFunction complianceProbability

immuneWaningHalfLife

Abstraction.SimpleFunction immuneWaningHalfLife

incubationPeriod

Abstraction.SimpleFunction incubationPeriod

infectiousDuration

Abstraction.SimpleFunction infectiousDuration

maximumSocialContactReduction

Abstraction.SimpleFunction maximumSocialContactReduction

peakToRecoveryDelay

Abstraction.SimpleFunction peakToRecoveryDelay

symptomDuration

Abstraction.SimpleFunction symptomDuration

Class io.github.ai4ci.config.PartialExecutionConfiguration

class PartialExecutionConfiguration extends Object implements Serializable

Serialized Fields

appUseProbability

Abstraction.Distribution appUseProbability

asymptomaticFraction
```
Double asymptomaticFraction
```

availableTests

ShallowList<TestParameters> availableTests

caseFatalityRate
```
Double caseFatalityRate
```
caseHospitalisationRate
```
Double caseHospitalisationRate
```
complianceDeteriorationRate
```
Double complianceDeteriorationRate
```
complianceImprovementRate
```
Double complianceImprovementRate
```

complianceProbability

Abstraction.Distribution complianceProbability

contactDetectedProbability
```
Double contactDetectedProbability
```
defaultBehaviourModelName
```
String defaultBehaviourModelName
```
defaultPolicyModelName
```
String defaultPolicyModelName
```

demographicAdjustment

PartialDemographicAdjustment demographicAdjustment

importationProbability
```
Double importationProbability
```
inHostConfiguration
```
InHostConfiguration inHostConfiguration
```
initialEstimateIncubationPeriod
```
Double initialEstimateIncubationPeriod
```
initialEstimateInfectionDuration
```
Double initialEstimateInfectionDuration
```

initialEstimateSymptomSensitivity

Double initialEstimateSymptomSensitivity

initialEstimateSymptomSpecificity

Double initialEstimateSymptomSpecificity

lockdownReleasePrevalenceTrigger
```
Double lockdownReleasePrevalenceTrigger
```
lockdownStartPrevalenceTrigger
```
Double lockdownStartPrevalenceTrigger
```

maximumSocialContactReduction

Abstraction.Distribution maximumSocialContactReduction

name
```
String name
```
organicRateOfMobilityChange
```
Double organicRateOfMobilityChange
```
replicate
```
Integer replicate
```

riskModelContactsKernel

RiskKernelConfiguration riskModelContactsKernel

riskModelSymptomKernel

RiskKernelConfiguration riskModelSymptomKernel

riskModelTestKernel

RiskKernelConfiguration riskModelTestKernel

rO
```
Double rO
```
smartAppRiskTrigger
```
Double smartAppRiskTrigger
```

symptomSensitivity

Abstraction.Distribution symptomSensitivity

symptomSpecificity

Abstraction.Distribution symptomSpecificity

Package io.github.ai4ci.config.inhost

Class io.github.ai4ci.config.inhost.ImmutableMarkovStateModel

class ImmutableMarkovStateModel extends Object implements Serializable
- Serialized Fields
  - immuneWaningHalfLife
    
    Abstraction.Distribution immuneWaningHalfLife
  - incubationPeriod
    
    Abstraction.Distribution incubationPeriod
  - infectiousDuration
    
    Abstraction.Distribution infectiousDuration
  - symptomDuration
    
    Abstraction.Distribution symptomDuration

Class io.github.ai4ci.config.inhost.ImmutablePhenomenologicalModel

class ImmutablePhenomenologicalModel extends Object implements Serializable

Serialized Fields

approxPeakImmuneResponse

Abstraction.Distribution approxPeakImmuneResponse

approxPeakViralLoad

Abstraction.Distribution approxPeakViralLoad

immuneWaningHalfLife

Abstraction.Distribution immuneWaningHalfLife

incubationPeriod

Abstraction.Distribution incubationPeriod

incubationToPeakViralLoadDelay

Abstraction.Distribution incubationToPeakViralLoadDelay

infectiousnessCutoff
```
Double infectiousnessCutoff
```

peakImmuneResponseDelay

Abstraction.Distribution peakImmuneResponseDelay

peakToRecoveryDelay

Abstraction.Distribution peakToRecoveryDelay

Class io.github.ai4ci.config.inhost.ImmutableStochasticModel

class ImmutableStochasticModel extends Object implements Serializable

Serialized Fields

baselineViralInfectionRate
```
Double baselineViralInfectionRate
```
baselineViralReplicationRate
```
Double baselineViralReplicationRate
```

immuneActivationRate

Abstraction.Distribution immuneActivationRate

immuneTargetRatio

Abstraction.Distribution immuneTargetRatio

immuneWaningRate

Abstraction.Distribution immuneWaningRate

infectionCarrierProbability

Abstraction.Distribution infectionCarrierProbability

targetCellCount
```
Integer targetCellCount
```

targetRecoveryRate

Abstraction.Distribution targetRecoveryRate

virionsDiseaseCutoff
```
Integer virionsDiseaseCutoff
```

Class io.github.ai4ci.config.inhost.PartialMarkovStateModel

class PartialMarkovStateModel extends Object implements Serializable
- Serialized Fields
  - immuneWaningHalfLife
    
    Abstraction.Distribution immuneWaningHalfLife
  - incubationPeriod
    
    Abstraction.Distribution incubationPeriod
  - infectiousDuration
    
    Abstraction.Distribution infectiousDuration
  - symptomDuration
    
    Abstraction.Distribution symptomDuration

Class io.github.ai4ci.config.inhost.PartialPhenomenologicalModel

class PartialPhenomenologicalModel extends Object implements Serializable

Serialized Fields

approxPeakImmuneResponse

Abstraction.Distribution approxPeakImmuneResponse

approxPeakViralLoad

Abstraction.Distribution approxPeakViralLoad

immuneWaningHalfLife

Abstraction.Distribution immuneWaningHalfLife

incubationPeriod

Abstraction.Distribution incubationPeriod

incubationToPeakViralLoadDelay

Abstraction.Distribution incubationToPeakViralLoadDelay

infectiousnessCutoff
```
Double infectiousnessCutoff
```

peakImmuneResponseDelay

Abstraction.Distribution peakImmuneResponseDelay

peakToRecoveryDelay

Abstraction.Distribution peakToRecoveryDelay

Class io.github.ai4ci.config.inhost.PartialStochasticModel

class PartialStochasticModel extends Object implements Serializable

Serialized Fields

baselineViralInfectionRate
```
Double baselineViralInfectionRate
```
baselineViralReplicationRate
```
Double baselineViralReplicationRate
```

immuneActivationRate

Abstraction.Distribution immuneActivationRate

immuneTargetRatio

Abstraction.Distribution immuneTargetRatio

immuneWaningRate

Abstraction.Distribution immuneWaningRate

infectionCarrierProbability

Abstraction.Distribution infectionCarrierProbability

targetCellCount
```
Integer targetCellCount
```

targetRecoveryRate

Abstraction.Distribution targetRecoveryRate

virionsDiseaseCutoff
```
Integer virionsDiseaseCutoff
```

Package io.github.ai4ci.config.riskmodel
- Class io.github.ai4ci.config.riskmodel.ImmutableRiskKernelInBuilt
  
  class ImmutableRiskKernelInBuilt extends Object implements Serializable
  - Serialized Fields
    
    kernel
    
    Kernels kernel
- Class io.github.ai4ci.config.riskmodel.ImmutableRiskKernelProvided
  
  class ImmutableRiskKernelProvided extends Object implements Serializable
  - Serialized Fields
    
    density
    
    double[] density
    
    offset
    
    int offset
Package io.github.ai4ci.config.setup
- Class io.github.ai4ci.config.setup.ImmutableAgeStratifiedNetworkConfiguration
  
  class ImmutableAgeStratifiedNetworkConfiguration extends Object implements Serializable
  - Serialized Fields
    
    ageDistribution
    
    ImmutableEmpiricalDistribution ageDistribution
    
    initialImports
    
    Integer initialImports
    
    name
    
    String name
    
    networkConnectedness
    
    int networkConnectedness
    
    networkRandomness
    
    double networkRandomness
    
    networkSize
    
    Integer networkSize
    
    normalisedOddsContactFromAgeDifference
    
    Abstraction.SimpleFunction normalisedOddsContactFromAgeDifference
    
    oddsContactFromAgeDifference
    
    Abstraction.SimpleFunction oddsContactFromAgeDifference
    
    replicate
    
    Integer replicate
- Class io.github.ai4ci.config.setup.ImmutableWattsStrogatzConfiguration
  
  class ImmutableWattsStrogatzConfiguration extends Object implements Serializable
  - Serialized Fields
    
    initialImports
    
    Integer initialImports
    
    name
    
    String name
    
    networkConnectedness
    
    Integer networkConnectedness
    
    networkRandomness
    
    Double networkRandomness
    
    networkSize
    
    Integer networkSize
    
    replicate
    
    Integer replicate
- Class io.github.ai4ci.config.setup.PartialAgeStratifiedNetworkConfiguration
  
  class PartialAgeStratifiedNetworkConfiguration extends Object implements Serializable
  - Serialized Fields
    
    ageDistribution
    
    EmpiricalDistribution ageDistribution
    
    initialImports
    
    Integer initialImports
    
    name
    
    String name
    
    networkConnectedness
    
    int networkConnectedness
    
    networkRandomness
    
    double networkRandomness
    
    networkSize
    
    Integer networkSize
    
    normalisedOddsContactFromAgeDifference
    
    Abstraction.SimpleFunction normalisedOddsContactFromAgeDifference
    
    oddsContactFromAgeDifference
    
    Abstraction.SimpleFunction oddsContactFromAgeDifference
    
    replicate
    
    Integer replicate
- Class io.github.ai4ci.config.setup.PartialWattsStrogatzConfiguration
  
  class PartialWattsStrogatzConfiguration extends Object implements Serializable
  - Serialized Fields
    
    initialImports
    
    Integer initialImports
    
    name
    
    String name
    
    networkConnectedness
    
    Integer networkConnectedness
    
    networkRandomness
    
    Double networkRandomness
    
    networkSize
    
    Integer networkSize
    
    replicate
    
    Integer replicate
Package io.github.ai4ci.util
- Class io.github.ai4ci.util.Binomial
  
  class Binomial extends org.apache.commons.lang3.tuple.MutablePair<Integer,Integer> implements Serializable
- Class io.github.ai4ci.util.Binomial.Confidence
  
  class Confidence extends org.apache.commons.lang3.tuple.ImmutablePair<Double,Double> implements Serializable
- Class io.github.ai4ci.util.DelayDistribution
  
  class DelayDistribution extends Object implements Serializable
- Class io.github.ai4ci.util.Ephemeral
  
  class Ephemeral extends Object implements Serializable
- Class io.github.ai4ci.util.ImmutableDelayDistribution
  
  class ImmutableDelayDistribution extends DelayDistribution implements Serializable
  - Serialized Fields
    
    condDensity
    
    double[] condDensity
    
    density
    
    double[] density
    
    hazard
    
    double[] hazard
    
    pAffected
    
    double pAffected
    
    profile
    
    double[] profile
    
    survival
    
    double[] survival
    
    total
    
    double total
- Class io.github.ai4ci.util.ImmutableEmpiricalDistribution
  
  class ImmutableEmpiricalDistribution extends Object implements Serializable
  - Serialized Fields
    
    cumulativeProbability
    
    double[] cumulativeProbability
    
    maximum
    
    double maximum
    
    minimum
    
    double minimum
    
    quantile
    
    SplineInterpolator quantile
    
    x
    
    double[] x
- Class io.github.ai4ci.util.ImmutableEmpiricalFunction
  
  class ImmutableEmpiricalFunction extends Object implements Serializable
  - Serialized Fields
    
    interpolator
    
    SplineInterpolator interpolator
    
    link
    
    EmpiricalFunction.Link link
    
    max
    
    double max
    
    min
    
    double min
    
    x
    
    double[] x
    
    y
    
    double[] y
- Class io.github.ai4ci.util.ImmutableFixedValueFunction
  
  class ImmutableFixedValueFunction extends Object implements Serializable
  - Serialized Fields
    
    value
    
    double value
- Class io.github.ai4ci.util.ImmutableHistogramDistribution
  
  class ImmutableHistogramDistribution extends Object implements Serializable
  - Serialized Fields
    
    max
    
    double max
    
    min
    
    double min
    
    samples
    
    double[] samples
    
    x
    
    double[] x
- Class io.github.ai4ci.util.ImmutableResampledDistribution
  
  class ImmutableResampledDistribution extends Object implements Serializable
  - Serialized Fields
    
    central
    
    double central
    
    combiner
    
    ModelOperation.BiFunction<Double,Double,Double> combiner
    
    first
    
    Abstraction.Distribution first
    
    median
    
    double median
    
    samples
    
    double[] samples
    
    second
    
    Abstraction.Distribution second
- Class io.github.ai4ci.util.ImmutableSimpleDistribution
  
  class ImmutableSimpleDistribution extends Object implements Serializable
  - Serialized Fields
    
    central
    
    double central
    
    dispersion
    
    Double dispersion
    
    median
    
    double median
    
    samples
    
    double[] samples
    
    type
    
    SimpleDistribution.Type type
- Exception io.github.ai4ci.util.Sampler.OutOfRangeException
  
  class OutOfRangeException extends RuntimeException implements Serializable
- Class io.github.ai4ci.util.ShallowList
  
  class ShallowList extends ArrayList<X> implements Serializable
- Class io.github.ai4ci.util.SplineInterpolator
  
  class SplineInterpolator extends Object implements Serializable
  - Serialized Fields
    
    mM
    
    double[] mM
    
    mX
    
    double[] mX
    
    mY
    
    double[] mY
- Class io.github.ai4ci.util.ThreadSafeArray
  
  class ThreadSafeArray extends Object implements Serializable
  - Serialized Fields
    
    data
    
    X[] data
    
    pointer
    
    AtomicInteger pointer
- Exception io.github.ai4ci.util.ThreadSafeArray.OutOfSpaceException
  
  class OutOfSpaceException extends RuntimeException implements Serializable
- Class io.github.ai4ci.util.ThreadSafeBuffer
  
  class ThreadSafeBuffer extends Object implements Serializable
  - Serialized Fields
    
    capacity
    
    int capacity
    
    data
    
    X[] data
    
    next
    
    AtomicInteger next
    
    tail
    
    AtomicInteger tail
    
    type
    
    Class<X> type

Serialized Form

Package io.github.ai4ci.abm

Class io.github.ai4ci.abm.ImmutableContact

Serialized Fields

detected

participant1Id

participant2Id

Class io.github.ai4ci.abm.ImmutableOutbreakBaseline

Serialized Fields

defaultPolicyState

expectedContactsPerPersonPerDay

infectiveDuration

severityDeathCutoff

severityHospitalisationCutoff

severitySymptomsCutoff

symptomDuration

viralLoadTransmissibilityProbabilityFactor

Class io.github.ai4ci.abm.ImmutableOutbreakHistory

Serialized Fields

cumulativeAdmissions

cumulativeComplianceDecrease

cumulativeInfections

cumulativeMobilityDecrease

entity

incidence

infectedCount

maximumHospitalBurden

maximumIncidence

maximumPrevalence

testNegativesByResultDate

testPositivesByResultDate

time

timeToMaximumIncidence

urn

Class io.github.ai4ci.abm.ImmutableOutbreakState

Serialized Fields

contactDetectedProbability

entity

presumedIncubationPeriod

presumedInfectiousPeriod

presumedSymptomSensitivity

presumedSymptomSpecificity

time

transmissibilityModifier

urn

Class io.github.ai4ci.abm.ImmutablePersonBaseline

Serialized Fields

appUseProbability

complianceBaseline

defaultBehaviourState

mobilityBaseline

selfIsolationDepth

symptomSensitivity

symptomSpecificity

transmissibilityModifier

Class io.github.ai4ci.abm.ImmutablePersonDemographic

Serialized Fields

age

Class io.github.ai4ci.abm.ImmutablePersonHistory

Serialized Fields

contactExposure

dead

entity

infectious

maxDelay

normalisedSeverity

normalisedViralLoad

presumedLocalPrevalence

reportedSymptomatic

requiringHospitalisation

symptomatic

time

todaysContacts

todaysExposures

todaysTests

urn

Class io.github.ai4ci.abm.ImmutablePersonState

Serialized Fields

appUseModifier

complianceModifier