Package io.github.ai4ci.abm.inhost

Interface InHostPhenomenologicalState

All Superinterfaces:

InHostModelState<PhenomenologicalModel>, Serializable

All Known Implementing Classes:

ImmutableInHostPhenomenologicalState

@Immutable
public interface InHostPhenomenologicalState
extends InHostModelState<PhenomenologicalModel>

Field Summary

Fields

Modifier and Type	Field	Description
static final org.slf4j.Logger	log

Method Summary

Modifier and Type	Method	Description
List<ExposureModel>	getExposures()
default double	getImmuneActivity()
ExposureModel.BiPhasicLogistic	getImmunityModel()
double	getInfectiousnessCutoff()
default double	getNormalisedSeverity()
default double	getNormalisedViralLoad()
int	getTime()
default double	getViralLoad()
ExposureModel.BiPhasicLogistic	getViralLoadModel()
default boolean	isInfected()	infected but not necessarily infectious.
default InHostPhenomenologicalState	update(Sampler sampler, double virionDose, double immunisationDose)

Methods inherited from interface io.github.ai4ci.abm.inhost.InHostModelState

update

Field Details

log

static final org.slf4j.Logger log

Method Details

getViralLoadModel

ExposureModel.BiPhasicLogistic getViralLoadModel()

getImmunityModel

ExposureModel.BiPhasicLogistic getImmunityModel()

getExposures

@Redacted
List<ExposureModel> getExposures()

getInfectiousnessCutoff

double getInfectiousnessCutoff()

getTime

int getTime()

Specified by:

getTime in interface InHostModelState<PhenomenologicalModel>

getViralLoad

@Derived
default double getViralLoad()

getImmuneActivity

@Derived
default double getImmuneActivity()

Specified by:

getImmuneActivity in interface InHostModelState<PhenomenologicalModel>

getNormalisedViralLoad

default double getNormalisedViralLoad()

Specified by:

getNormalisedViralLoad in interface InHostModelState<PhenomenologicalModel>

isInfected

default boolean isInfected()

infected but not necessarily infectious.

Specified by:

isInfected in interface InHostModelState<PhenomenologicalModel>

getNormalisedSeverity

default double getNormalisedSeverity()

Specified by:

getNormalisedSeverity in interface InHostModelState<PhenomenologicalModel>

update

default InHostPhenomenologicalState update(Sampler sampler,
 double virionDose,
 double immunisationDose)

Specified by:

update in interface InHostModelState<PhenomenologicalModel>