Simple statistical models and visualisations for calculating the incidence, proportion, exponential growth rate, and reproduction number of infectious disease case time series. This tool kit was largely developed during the COVID-19 pandemic.
Installation
ggoutbreak is hosted on the AI4CI r-universe. Installation from there is as follows:
options(repos = c(
"ai4ci" = 'https://ai4ci.r-universe.dev/',
CRAN = 'https://cloud.r-project.org'))
# Download and install ggoutbreak in R
install.packages("ggoutbreak")You can install the development version of ggoutbreak from GitHub with:
# install.packages("devtools")
devtools::install_github("ai4ci/ggoutbreak")Funding
The authors gratefully acknowledge the support of the UK Research and Innovation AI programme of the Engineering and Physical Sciences Research Council EPSRC grant EP/Y028392/1.